Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67656.1KEGG: slo:Shew_3148 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (147 aa)    
Predicted Functional Partners:
ADD67655.1
KEGG: gsu:GSU0139 hypothetical protein.
 
     0.602
ADD66846.1
PFAM: regulatory protein TetR; KEGG: bja:bll5689 transcriptional regulatory protein.
  
   
 0.470
ADD68144.1
Transcriptional regulator, AraC family; KEGG: gur:Gura_0784 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
  
 0.443
ADD69222.1
KEGG: vfm:VFMJ11_1150 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.
  
  
 0.441
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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