Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67667.1PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vsp:VS_II0834 putative threonine efflux protein. (201 aa)    
Predicted Functional Partners:
ADD69221.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bpt:Bpet3184 amino acid transporter LysE.
  
     0.774
ADD67666.1
PFAM: glycosyl transferase group 1; KEGG: dvu:DVU1061 glycosyl transferase, group 1 family protein.
       0.773
ADD69222.1
KEGG: vfm:VFMJ11_1150 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.
 
     0.507
ADD69643.1
Transcriptional regulator, GntR family with aminotransferase domain; KEGG: scl:sce5745 transcriptional regulator; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
 
   
 0.454
ADD67737.1
KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
     0.433
ADD68867.1
KEGG: ypy:YPK_1334 transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
 
   
 0.433
ADD67798.1
KEGG: pap:PSPA7_3415 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.
  
     0.418
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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