Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADD67696.1PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dds:Ddes_0993 TonB-dependent receptor. (728 aa)    
Predicted Functional Partners:
ADD67697.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dds:Ddes_0992 methyltransferase type 11.
 
     0.826
ADD67693.1
KEGG: gur:Gura_0773 TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
 
 
 0.793
ADD67700.1
KEGG: dds:Ddes_0989 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.790
ADD67698.1
PFAM: periplasmic binding protein; KEGG: dds:Ddes_0991 periplasmic binding protein.
  
  
 0.785
ADD67699.1
PFAM: transport system permease protein; KEGG: dds:Ddes_0990 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.782
ADD68853.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; KEGG: nis:NIS_0011 transcriptional regulator.
  
     0.748
ADD67611.1
TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dal:Dalk_0572 PAS/PAC sensor hybrid histidine kinase; SMART: PAS domain containing protein.
  
     0.745
ADD69609.1
KEGG: geo:Geob_2165 PBS lyase heat domain protein repeat-containing protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
  
    0.740
ADD67569.1
KEGG: gbm:Gbem_1124 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein.
  
     0.732
ADD68513.1
KEGG: hypothetical protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
  
     0.727
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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