Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67697.1PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dds:Ddes_0992 methyltransferase type 11. (251 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.943
ADD67696.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dds:Ddes_0993 TonB-dependent receptor.
 
     0.826
ADD67698.1
PFAM: periplasmic binding protein; KEGG: dds:Ddes_0991 periplasmic binding protein.
 
     0.814
ADD67699.1
PFAM: transport system permease protein; KEGG: dds:Ddes_0990 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.773
ADD67700.1
KEGG: dds:Ddes_0989 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   0.533
atpH
ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
  
   0.499
ADD67693.1
KEGG: gur:Gura_0773 TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
       0.495
ADD67694.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hsm:HSM_1101 TonB system transport protein ExbD type-2.
       0.495
ADD67695.1
KEGG: glo:Glov_3670 TonB-system energizer ExbB; TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel.
       0.495
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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