STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD67717.1Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: ret:RHE_PE00434 Cro/CI family transcriptional regulator. (244 aa)    
Predicted Functional Partners:
ADD67422.1
KEGG: gur:Gura_4388 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein.
  
  
 0.618
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.535
ADD69544.1
KEGG: gbm:Gbem_3628 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; molybdenum cofactor synthesis domain protein; PFAM: CinA domain protein; molybdopterin binding domain.
     
 0.521
ADD68145.1
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response).
     
 0.520
ADD67718.1
Cytochrome c3; KEGG: gbm:Gbem_4043 cytochrome c3.
       0.453
ADD67206.1
SMART: DNA-directed DNA polymerase; Helix-hairpin- helix domain protein class 2; 5'-3' exonuclease; TIGRFAM: DNA polymerase I; KEGG: sfu:Sfum_1612 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain.
     
 0.422
ADD67719.1
KEGG: cff:CFF8240_0440 nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II.
       0.409
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.