Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD67723.1KEGG: cff:CFF8240_0444 hypothetical protein. (175 aa)    
Predicted Functional Partners:
ADD68308.1
KEGG: gbm:Gbem_1236 cytochrome c oxidase, cbb3- type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I.
  
 
 0.969
ADD67725.1
TIGRFAM: ferredoxin-type protein, NapH/MauN family; KEGG: sun:SUN_2173 NapH/MauN family ferredoxin-type protein.
  
  
 0.794
ADD67721.1
SMART: Parallel beta-helix repeat; KEGG: cff:CFF8240_0442 nitrous oxidase accessory protein.
       0.776
ADD67722.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: wsu:WS0920 iron-sulfur protein.
     
 0.775
ADD67724.1
KEGG: cco:CCC13826_1724 hypothetical protein.
      
0.773
ADD67726.1
KEGG: wsu:WS0924 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
ADD68445.1
PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: dar:Daro_3137 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit.
   
 
 0.767
ADD68307.1
KEGG: ade:Adeh_1171 cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.761
ADD67720.1
KEGG: wsu:WS0918 hypothetical protein.
       0.755
ADD67728.1
KEGG: nis:NIS_1780 ABC transporter, permease.
       0.702
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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