STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD67737.1KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (347 aa)    
Predicted Functional Partners:
ADD67736.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ypi:YpsIP31758_0681 TonB-dependent receptor.
 
   
 0.778
ADD68194.1
KEGG: dma:DMR_01320 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.619
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.610
ADD68371.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pau:PA14_55050 TonB-dependent receptor.
  
   
 0.568
ADD68836.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dal:Dalk_0342 TonB-dependent receptor.
  
   
 0.514
ADD68370.1
KEGG: wsu:WS1264 ABC transporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
  
 0.483
ADD68839.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dds:Ddes_0426 binding-protein-dependent transport systems inner membrane component.
  
     0.465
ADD68942.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccv:CCV52592_0423 AbcB protein.
  
     0.445
ADD67667.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vsp:VS_II0834 putative threonine efflux protein.
 
     0.434
ADD68841.1
Transcriptional regulator, AraC family; KEGG: smd:Smed_4732 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
0.430
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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