Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67740.1KEGG: dde:Dde_0445 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase. (297 aa)    
Predicted Functional Partners:
ADD67739.1
PFAM: TonB-dependent receptor plug; KEGG: pca:Pcar_1947 hypothetical protein.
 
    0.813
ADD67741.1
KEGG: abu:Abu_1852 hypothetical protein.
  
    0.813
ADD67742.1
KEGG: dvl:Dvul_0847 hypothetical protein.
  
    0.792
ADD67748.1
Hypothetical protein; KEGG: dal:Dalk_3601 TPR repeat-containing protein.
   
 
 0.777
ADD67747.1
KEGG: dps:DP2971 TonB protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
  
    0.775
ADD67749.1
PFAM: peptidase M16 domain protein; KEGG: swp:swp_4956 probable zinc protease; Belongs to the peptidase M16 family.
       0.774
ADD67743.1
KEGG: dal:Dalk_3524 hypothetical protein.
       0.773
ADD67744.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00070 TolQ3.
       0.773
ADD67745.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00060 TolQ2.
       0.773
ADD67746.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pha:PSHAb0523 putative TonB system-dependent transport protein.
       0.773
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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