Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67746.1PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pha:PSHAb0523 putative TonB system-dependent transport protein. (135 aa)    
Predicted Functional Partners:
ADD67744.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00070 TolQ3.
 
 
 0.979
ADD67745.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00060 TolQ2.
 
 
 0.978
ADD67747.1
KEGG: dps:DP2971 TonB protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
 
 
 0.965
ADD67743.1
KEGG: dal:Dalk_3524 hypothetical protein.
 
     0.941
ADD68377.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like.
 
 
 0.913
ADD68376.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2154 biopolymer transport protein (ExbB)-like.
 
 
 0.912
ADD67609.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein.
 
 
 0.885
ADD67874.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel.
 
 
 0.884
ADD68374.1
TonB family protein; KEGG: dde:Dde_2156 TonB-like; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
 
 
 0.883
ADD67739.1
PFAM: TonB-dependent receptor plug; KEGG: pca:Pcar_1947 hypothetical protein.
  
  
 0.842
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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