Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67759.1RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: dat:HRM2_02190 predicted RNA polymerase ECF- type sigma factor(extracytoplasmic function); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (160 aa)    
Predicted Functional Partners:
ADD67758.1
KEGG: dat:HRM2_02180 hypothetical 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb).
 
   
 0.856
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.824
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.824
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.813
ADD67756.1
KEGG: dat:HRM2_02200 hypothetical protein.
       0.789
ADD67757.1
KEGG: dal:Dalk_3690 glycoside hydrolase family 13 domain protein.
       0.788
ADD68328.1
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.769
ADD66979.1
PFAM: MCP methyltransferase CheR-type; KEGG: gme:Gmet_2420 MCP methyltransferase, CheR- type; SMART: MCP methyltransferase CheR-type.
    
 
 0.696
ADD69472.1
PFAM: MCP methyltransferase CheR-type; KEGG: gur:Gura_3139 protein-glutamate O- methyltransferase; SMART: MCP methyltransferase CheR-type.
    
 
 0.696
ADD69610.1
PFAM: MCP methyltransferase CheR-type; KEGG: dvm:DvMF_0778 MCP methyltransferase, CheR- type; SMART: MCP methyltransferase CheR-type.
    
 
 0.696
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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