Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67765.1PFAM: Methyltransferase type 11; KEGG: dds:Ddes_0992 methyltransferase type 11. (251 aa)    
Predicted Functional Partners:
ADD67764.1
PFAM: periplasmic binding protein; KEGG: dds:Ddes_0991 periplasmic binding protein.
 
     0.840
ADD67762.1
KEGG: dds:Ddes_0989 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.811
ADD67763.1
PFAM: transport system permease protein; KEGG: dds:Ddes_0990 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.776
ADD67766.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dds:Ddes_0993 TonB-dependent receptor.
       0.773
ADD68462.1
PFAM: ABC-1 domain protein; KEGG: sun:SUN_2122 ABC transporter.
   
 
 0.618
ADD67767.1
Transcriptional regulator, Crp/Fnr family; KEGG: pca:Pcar_2562 cyclic AMP receptor protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp.
       0.525
ADD68417.1
PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin.
  
   
 0.459
ADD68853.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; KEGG: nis:NIS_0011 transcriptional regulator.
  
     0.458
ADD68863.1
PFAM: outer membrane porin; KEGG: sbm:Shew185_1155 outer membrane porin.
  
     0.447
ADD69011.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ypy:YPK_0218 hypothetical protein.
 
     0.447
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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