Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADD67811.1Hypothetical protein; KEGG: bba:Bd2899 protoporphyrinogen oxidase. (179 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.914
ADD66890.1
PFAM: FAD dependent oxidoreductase; KEGG: gur:Gura_0933 amine oxidase.
     
 0.906
ADD67604.1
Flavodoxin-like protein; KEGG: kpe:KPK_5329 protoporphyrinogen oxidase.
     
 
0.900
ADD67812.1
PFAM: Uncharacterised protein family UPF0324; KEGG: glo:Glov_0952 hypothetical protein.
       0.605
ADD67810.1
Hypothetical protein.
       0.557
ADD67809.1
KEGG: afw:Anae109_1491 putative RNA methylase.
       0.477
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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