Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
ADD68007.1KEGG: hpj:jhp1453 hypothetical protein. (160 aa)    
Predicted Functional Partners:
ADD68006.1
PFAM: DNA polymerase III delta; KEGG: gur:Gura_3132 DNA polymerase III, delta subunit.
       0.817
leuS
KEGG: dal:Dalk_1193 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.816
ADD68009.1
KEGG: dal:Dalk_4245 metal dependent phosphohydrolase; PFAM: GAF domain protein; SMART: GAF domain protein.
       0.466
ADD68010.1
Response regulator receiver protein; KEGG: slo:Shew_2803 DNA-binding transcriptional regulator TorR; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.466
ADD68011.1
biotin/acetyl-CoA-carboxylase ligase; KEGG: mxa:MXAN_4152 BirA bifunctional protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase.
       0.466
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.466
ADD68013.1
KEGG: sat:SYN_00927 hypothetical protein.
       0.455
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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