Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68016.1KEGG: pca:Pcar_1859 NifU-like protein; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein. (144 aa)    
Predicted Functional Partners:
ADD68015.1
KEGG: afw:Anae109_0637 cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
 
 0.999
ADD69162.1
KEGG: cysteine desulfurase, mitochondrial precursor; K04487 cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
 
 0.997
ADD66936.1
TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: aha:AHA_2167 xanthine dehydrogenase accessory factor.
  
 
 0.970
ADD68848.1
Cysteine desulfurase; KEGG: scl:sce1210 hypothetical protein; PFAM: aminotransferase class V.
  
 
 0.970
ADD68017.1
PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 NifU-like protein.
  
 
 0.957
mnmA
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.896
ADD67342.1
KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division.
  
 0.855
ADD67453.1
KEGG: sat:SYN_01836 MreB-like ATPase involved in cell division.
  
 0.855
ADD69479.1
PFAM: Heat shock protein 70; KEGG: sat:SYN_01983 chaperone protein.
  
 0.855
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.855
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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