Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
ADD68057.1KEGG: dps:DP0975 hypothetical protein. (223 aa)    
Predicted Functional Partners:
ADD68056.1
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: dps:DP0974 hypothetical protein.
       0.773
ADD68055.1
H(+)-transporting two-sector ATPase; KEGG: dps:DP0973 V-type sodium ATP synthase, subunit J; PFAM: cation transporter.
       0.739
ADD68054.1
PFAM: protein of unknown function DUF486; KEGG: dal:Dalk_4457 protein of unknown function DUF486.
       0.566
ADD68058.1
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
       0.469
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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