Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADD68269.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
ADD68270.1
Methyl-accepting chemotaxis sensory transducer; KEGG: wsu:WS1002 chemotaxis protein (TlpB); PFAM: Nitrate and nitrite sensing domain protein; chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer.
       0.773
ADD68271.1
PFAM: membrane protein of unknown function; KEGG: dal:Dalk_4979 membrane protein of unknown function.
       0.531
ADD68272.1
KEGG: cja:CJA_1643 hypothetical protein.
       0.531
ADD68273.1
PFAM: permease YjgP/YjgQ family protein; KEGG: geo:Geob_1523 permease YjgP/YjgQ family protein.
       0.531
ADD68274.1
PFAM: permease YjgP/YjgQ family protein; KEGG: sat:SYN_00415 permease.
       0.531
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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