Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68368.1PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1266 hypothetical protein. (427 aa)    
Predicted Functional Partners:
ADD68371.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pau:PA14_55050 TonB-dependent receptor.
 
   
 0.931
ADD68369.1
KEGG: wsu:WS1265 ABC transporter ATP- binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
   
 0.879
ADD68370.1
KEGG: wsu:WS1264 ABC transporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
   
 0.871
ADD68367.1
PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1267 MFS family transporter.
 
     0.783
ADD68836.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dal:Dalk_0342 TonB-dependent receptor.
  
   
 0.675
ADD67736.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ypi:YpsIP31758_0681 TonB-dependent receptor.
  
   
 0.644
ADD68378.1
KEGG: dde:Dde_2152 hypothetical protein.
 
     0.608
ADD68372.1
KEGG: dar:Daro_1117 hypothetical protein.
       0.590
ADD68375.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2).
   
   0.567
ADD68373.1
SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein.
       0.554
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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