Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68372.1KEGG: dar:Daro_1117 hypothetical protein. (49 aa)    
Predicted Functional Partners:
ADD68375.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2).
  
  
 0.770
ADD68374.1
TonB family protein; KEGG: dde:Dde_2156 TonB-like; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
  
    0.744
ADD68376.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2154 biopolymer transport protein (ExbB)-like.
  
  
 0.734
ADD68377.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like.
  
  
 0.734
ADD68373.1
SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein.
       0.723
ADD68378.1
KEGG: dde:Dde_2152 hypothetical protein.
       0.723
ADD68371.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pau:PA14_55050 TonB-dependent receptor.
  
  
 0.597
ADD68368.1
PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1266 hypothetical protein.
       0.590
ADD68369.1
KEGG: wsu:WS1265 ABC transporter ATP- binding/permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
       0.590
ADD68370.1
KEGG: wsu:WS1264 ABC transporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
       0.590
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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