STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD68374.1TonB family protein; KEGG: dde:Dde_2156 TonB-like; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein. (224 aa)    
Predicted Functional Partners:
ADD68375.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2).
 
 
 0.974
ADD68377.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2153 transport protein TolQ-like.
 
 
 0.973
ADD68376.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_2154 biopolymer transport protein (ExbB)-like.
 
 
 0.954
ADD68378.1
KEGG: dde:Dde_2152 hypothetical protein.
 
   
 0.941
ADD68373.1
SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein.
 
    0.936
ADD67746.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pha:PSHAb0523 putative TonB system-dependent transport protein.
 
 
 0.897
ADD67744.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00070 TolQ3.
 
 
 0.869
ADD68371.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pau:PA14_55050 TonB-dependent receptor.
 
 
 0.861
ADD67745.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dat:HRM2_00060 TolQ2.
 
 
 0.783
ADD67766.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dds:Ddes_0993 TonB-dependent receptor.
 
 
 0.766
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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