STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD68443.1KEGG: slo:Shew_0515 hypothetical protein. (645 aa)    
Predicted Functional Partners:
ADD67265.1
KEGG: ppr:PBPRA1496 hypothetical trimethylamine N- oxide reductase,cytochrome c-type subunit.
  
     0.743
ADD67571.1
KEGG: gsu:GSU0616 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein.
  
     0.731
ADD67569.1
KEGG: gbm:Gbem_1124 cytochrome c family protein; TIGRFAM: cytochrome C family protein; PFAM: doubled CXXCH domain protein.
  
     0.718
ADD68439.1
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: wsu:WS0626 sulfur transferase precursor.
 
     0.698
ADD67126.1
KEGG: dat:HRM2_31460 hypothetical protein.
  
     0.697
ADD68417.1
PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin.
  
     0.689
ADD68440.1
PFAM: Polysulphide reductase NrfD; KEGG: wsu:WS0707 molybdopterin oxidoreductase, membrane subunit.
 
     0.689
ADD69381.1
PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin.
  
     0.666
ADD66812.1
PFAM: Protein of unknown function DUF2232, membrane; KEGG: sfu:Sfum_3186 hypothetical protein.
  
     0.664
ADD68863.1
PFAM: outer membrane porin; KEGG: sbm:Shew185_1155 outer membrane porin.
  
     0.658
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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