Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68463.1KEGG: sun:SUN_2121 hypothetical protein. (91 aa)    
Predicted Functional Partners:
ADD68462.1
PFAM: ABC-1 domain protein; KEGG: sun:SUN_2122 ABC transporter.
       0.799
ADD68464.1
KEGG: dat:HRM2_23060 ATP-type transporter, ATP binding protein (ATPase); PFAM: ABC transporter related; SMART: AAA ATPase.
       0.682
ADD68461.1
Extracellular solute-binding protein family 3; KEGG: aha:AHA_2800 amino acid ABC transporter, periplasmic amino acid-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
       0.531
ADD68465.1
KEGG: tdn:Suden_0210 hypothetical protein.
       0.472
ADD68466.1
KEGG: nam:NAMH_1064 mcp-signal transduction protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer.
       0.466
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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