Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD68563.1Hypothetical protein; KEGG: vfi:VF_A0099 glutamate synthase. (220 aa)    
Predicted Functional Partners:
ADD68564.1
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; KEGG: mxa:MXAN_5899 ADA regulatory protein; SMART: Helix-turn-helix, AraC domain.
       0.775
ADD68838.1
Hypothetical protein; KEGG: nis:NIS_1591 sulfonate/nitrate ABC transporter, substrate-binding protein.
  
     0.565
ADD68457.1
KEGG: pca:Pcar_0377 NifJ-like oxidoreductase, Fe-S subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain.
   
 
 0.488
ADD67126.1
KEGG: dat:HRM2_31460 hypothetical protein.
  
     0.470
ADD68693.1
KEGG: glo:Glov_3260 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.
     
 0.445
ADD68185.1
C_GCAxxG_C_C family protein; KEGG: gsu:GSU0395 hypothetical protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein.
 
     0.411
ADD69105.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: glo:Glov_1626 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.410
ADD66938.1
KEGG: dps:DP3065 hypothetical protein.
 
    0.406
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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