STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD68698.1KEGG: gme:Gmet_0423 radical SAM family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (291 aa)    
Predicted Functional Partners:
ADD68697.1
PFAM: purine or other phosphorylase family 1; KEGG: pca:Pcar_3117 methylthioadenosine nucleosidase.
     
 0.787
ADD68699.1
TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: ank:AnaeK_2769 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.777
ADD68347.1
KEGG: acp:A2cp1_0349 sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
  
  
 0.646
ADD69514.1
PFAM: protein of unknown function DUF344; KEGG: hha:Hhal_1873 hypothetical protein.
   
    0.553
ADD68700.1
PFAM: Lytic transglycosylase catalytic; KEGG: dvm:DvMF_1036 lytic transglycosylase catalytic.
       0.485
ADD68696.1
PFAM: carboxyl transferase; KEGG: mxa:MXAN_1113 propionyl-CoA carboxylase, beta subunit.
       0.456
ADD69683.1
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gur:Gura_3041 enoyl-CoA hydratase/isomerase.
  
    0.455
ADD68695.1
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: mxa:MXAN_1111 propionyl-CoA carboxylase, alpha subunit.
       0.448
ADD68694.1
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: ank:AnaeK_0269 biotin/lipoyl attachment domain-containing protein.
       0.440
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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