Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68732.1Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase. (442 aa)    
Predicted Functional Partners:
ADD68731.1
KEGG: gur:Gura_3741 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 
   0.907
ADD68081.1
KEGG: bba:Bd0843 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.
 
   
 0.776
ADD68730.1
KEGG: dma:DMR_19590 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
ADD68729.1
PFAM: protein of unknown function DUF214; KEGG: dma:DMR_19600 putative ABC transporter permease protein.
       0.752
ADD68728.1
PFAM: Protein of unknown function DUF2318, membrane; KEGG: gem:GM21_3166 hypothetical protein.
       0.736
ADD68881.1
Integral membrane sensor signal transduction histidine kinase; KEGG: geo:Geob_1370 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
 
   0.587
ADD67620.1
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: azo:azo0736 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 
 0.574
ADD67702.1
KEGG: gur:Gura_4191 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
 
   0.537
ADD69600.1
KEGG: ccv:CCV52592_1439 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
  
  
 0.523
ADD69331.1
Integral membrane sensor signal transduction histidine kinase; KEGG: geo:Geob_1370 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein.
  
 
   0.474
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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