STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD68734.1KEGG: ppu:PP_1429 sigma E regulatory protein, MucB/RseB. (250 aa)    
Predicted Functional Partners:
ADD67209.1
PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: hiq:CGSHiGG_07760 positive regulator of sigma E.
  
  
 0.940
ADD68736.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mpt:Mpe_A0642 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.890
ADD68733.1
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: gme:Gmet_1014 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein.
  
  
 0.851
ADD68735.1
KEGG: bch:Bcen2424_1875 putative transmembrane anti- sigma factor.
       0.820
ADD68737.1
KEGG: hypothetical protein; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
       0.485
ADD67759.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: dat:HRM2_02190 predicted RNA polymerase ECF- type sigma factor(extracytoplasmic function); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
 
 0.450
ADD67298.1
KEGG: gsu:GSU1914 membrane-associated zinc metalloprotease, putative; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50.
   
  
 0.407
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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