Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68740.1PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pca:Pcar_1050 peptidyl-prolyl cis-trans isomerase. (633 aa)    
Predicted Functional Partners:
ADD69058.1
KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein.
 
 
 0.640
ADD69142.1
TIGRFAM: outer membrane assembly lipoprotein YfiO; PFAM: TPR repeat-containing protein; KEGG: glo:Glov_2951 outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat.
  
 
 0.614
ADD68625.1
KEGG: sat:SYN_01607 organic solvent tolerance protein.
 
  
 0.600
yidC
Membrane protein insertase, YidC/Oxa1 family; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
  
 0.578
ADD69086.1
TIGRFAM: tol-pal system protein YbgF; KEGG: geo:Geob_1555 tol-pal system protein YbgF.
 
   0.551
msrB
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
   
 0.538
ADD69729.1
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
  
 0.537
clpP
ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
 0.511
ADD68741.1
PFAM: N-6 DNA methylase; KEGG: psa:PST_0252 type I restriction-modification system, M subunit.
       0.488
ADD68744.1
Protein of unknown function DUF450; KEGG: psa:PST_0248 type I restriction-modification system endonuclease; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
     
 0.483
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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