STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD68770.1Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (233 aa)    
Predicted Functional Partners:
ADD68771.1
KEGG: tdn:Suden_0208 response regulator receiver domain-containing protein; PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: response regulator receiver; protein phosphatase 2C domain protein.
       0.773
ADD67957.1
PFAM: ribosomal L11 methyltransferase; KEGG: hac:Hac_1179 ribosomal protein L11 methyltransferase.
  
  
 0.600
ADD68485.1
PFAM: ribosomal L11 methyltransferase; methyltransferase small; KEGG: gsu:GSU3320 ribosomal protein L11 methyltransferase, putative.
  
  
 0.600
ADD68772.1
KEGG: glo:Glov_1559 hypothetical protein.
       0.546
ADD68767.1
KEGG: dde:Dde_1350 RarD protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane.
       0.494
ADD68768.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein LOC100267823; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.494
ADD68769.1
PFAM: acyl-ACP thioesterase; KEGG: dal:Dalk_2643 acyl-ACP thioesterase.
       0.494
ADD69499.1
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rpa:RPA0030 Sun/nucleolar Nop1/Nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.488
ADD68796.1
PFAM: glycosyl transferase group 1; KEGG: hch:HCH_01609 glycosyltransferase.
  
     0.471
ADD67754.1
KEGG: hha:Hhal_2268 heat shock protein DnaJ domain- containing protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
   0.431
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.