Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
ADD68841.1Transcriptional regulator, AraC family; KEGG: smd:Smed_4732 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (298 aa)    
Predicted Functional Partners:
ADD69222.1
KEGG: vfm:VFMJ11_1150 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.
 
 
 0.798
ADD68194.1
KEGG: dma:DMR_01320 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.687
ADD68836.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dal:Dalk_0342 TonB-dependent receptor.
  
     0.507
ADD68371.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pau:PA14_55050 TonB-dependent receptor.
  
     0.476
ADD67736.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ypi:YpsIP31758_0681 TonB-dependent receptor.
  
     0.470
ADD68842.1
PFAM: NLPA lipoprotein; KEGG: bbr:BB4519 hypothetical protein.
       0.463
ADD67737.1
KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
0.440
ADD67019.1
Transcriptional regulator, LacI family; KEGG: oan:Oant_4373 regulatory protein LacI; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
  
   
 0.438
ADD68382.1
KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
0.436
ADD68145.1
Transcriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response).
   
 
 0.430
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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