Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADD68867.1KEGG: ypy:YPK_1334 transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (472 aa)    
Predicted Functional Partners:
ADD68516.1
PFAM: protein of unknown function DUF34; KEGG: gur:Gura_3988 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.532
ADD69222.1
KEGG: vfm:VFMJ11_1150 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain.
  
  
 0.486
ADD68866.1
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: eba:ebA5622 molybdenum enzyme, large subunit,related to phenylacetyl-CoA: acceptor oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.463
ADD68457.1
KEGG: pca:Pcar_0377 NifJ-like oxidoreductase, Fe-S subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain.
   
   0.462
ADD67799.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gsu:GSU1194 amino acid transporter LysE.
 
   
 0.449
ADD67667.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vsp:VS_II0834 putative threonine efflux protein.
 
   
 0.433
ADD67737.1
KEGG: dds:Ddes_0430 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
  
 0.418
ADD68707.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_2417 amino acid transporter LysE.
 
   
 0.404
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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