Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68904.1PFAM: periplasmic solute binding protein; KEGG: dat:HRM2_34130 putative ABC-type manganese/zinc transport system, substrate-binding component; Belongs to the bacterial solute-binding protein 9 family. (295 aa)    
Predicted Functional Partners:
ADD68907.1
ABC-3 protein; KEGG: dat:HRM2_34160 putative ABC-type manganese/zinc transport system, permease component; PFAM: ABC-3 protein; iron dependent repressor; transport system permease protein; SMART: iron dependent repressor.
  
 0.999
ADD69724.1
PFAM: ABC-3 protein; KEGG: cff:CFF8240_1727 cation ABC transporter, permease protein.
  
 0.990
ADD68906.1
KEGG: gem:GM21_3726 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.979
ADD69723.1
KEGG: sfu:Sfum_2734 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.874
ADD68905.1
KEGG: dat:HRM2_34140 hypothetical protein.
       0.773
ADD68903.1
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: wsu:WS0545 peroxide stress regulator; Belongs to the Fur family.
 
  
 0.641
ADD67726.1
KEGG: wsu:WS0924 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.636
ADD68908.1
Hypothetical protein.
       0.620
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.618
rpmB
Ribosomal protein L28; KEGG: dat:HRM2_12300 RpmB; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.581
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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