Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68920.1KEGG: dde:Dde_1384 hypothetical protein. (53 aa)    
Predicted Functional Partners:
ADD68919.1
KEGG: mmw:Mmwyl1_3696 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
       0.790
ADD68918.1
KEGG: mmw:Mmwyl1_3695 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
       0.725
ADD68917.1
KEGG: gem:GM21_2285 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.712
ADD68916.1
PFAM: Integral membrane protein TerC; KEGG: pmu:PM1066 hypothetical protein.
       0.451
ADD68921.1
KEGG: dvm:DvMF_0572 threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.
       0.438
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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