Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD68954.1PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_2955 TetR family transcriptional regulator. (192 aa)    
Predicted Functional Partners:
ADD68953.1
PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_0074 alpha/beta hydrolase fold.
 
   
 0.789
ADD68585.1
PFAM: regulatory protein TetR; KEGG: hch:HCH_06796 transcriptional regulator.
  
     0.721
ADD68955.1
PFAM: protein of unknown function DUF161; Protein of unknown function DUF2179; KEGG: dol:Dole_0958 hypothetical protein.
       0.518
ADD68596.1
PFAM: oxidoreductase molybdopterin binding; KEGG: rpa:RPA1731 molybdopterin oxidoreductase.
  
     0.462
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.431
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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