Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD69004.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
ADD69002.1
KEGG: avi:Avi_5260 hypothetical protein.
       0.784
ADD68999.1
Hypothetical protein.
       0.778
ADD69000.1
KEGG: par:Psyc_1018 hypothetical protein.
       0.777
ADD69001.1
Hypothetical protein.
       0.775
ADD69003.1
Hypothetical protein.
       0.775
ADD68997.1
Hypothetical protein.
       0.770
ADD68998.1
Hypothetical protein.
       0.768
ADD68996.1
KEGG: dde:Dde_3377 hypothetical protein.
       0.581
ADD68995.1
KEGG: dvu:DVU1117 hypothetical protein.
       0.563
ADD68994.1
KEGG: dal:Dalk_4775 hypothetical protein.
       0.556
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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