Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69046.1PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein. (295 aa)    
Predicted Functional Partners:
ADD69045.1
PFAM: cyclic nucleotide-binding; ribonuclease BN; KEGG: tbd:Tbd_1570 cyclic nucleotide-binding domain- containing protein.
       0.775
ADD69495.1
PFAM: O-antigen polymerase; KEGG: maq:Maqu_0780 O-antigen polymerase.
  
     0.536
ADD68417.1
PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin.
  
     0.526
ADD69047.1
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sat:SYN_02639 long-chain fatty acid transport protein.
       0.517
ADD69473.1
Hypothetical protein; KEGG: dvl:Dvul_1151 heat repeat-containing PBS lyase.
  
     0.490
ADD67611.1
TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: dal:Dalk_0572 PAS/PAC sensor hybrid histidine kinase; SMART: PAS domain containing protein.
  
     0.476
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.474
ADD68863.1
PFAM: outer membrane porin; KEGG: sbm:Shew185_1155 outer membrane porin.
  
     0.462
ADD69609.1
KEGG: geo:Geob_2165 PBS lyase heat domain protein repeat-containing protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein.
 
     0.459
ADD69381.1
PFAM: outer membrane porin; KEGG: spc:Sputcn32_3385 outer membrane porin.
  
     0.453
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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