STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD69086.1TIGRFAM: tol-pal system protein YbgF; KEGG: geo:Geob_1555 tol-pal system protein YbgF. (251 aa)    
Predicted Functional Partners:
ADD69085.1
KEGG: vpa:VPA0746 chemotaxis protein CheV; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein.
  
    0.812
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 
 0.613
ADD66886.1
KEGG: sfu:Sfum_3743 lipoprotein releasing system, transmembrane protein, LolC/E family; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
  
     0.611
ADD68625.1
KEGG: sat:SYN_01607 organic solvent tolerance protein.
 
   
 0.571
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.535
ADD69058.1
KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein.
 
  
 0.519
ADD69057.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: pca:Pcar_1252 outer membrane protein.
  
  
 0.516
ADD69083.1
Histidine kinase; KEGG: tcx:Tcr_1445 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
     
 0.513
ADD69142.1
TIGRFAM: outer membrane assembly lipoprotein YfiO; PFAM: TPR repeat-containing protein; KEGG: glo:Glov_2951 outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat.
 
   
 0.513
ADD69084.1
KEGG: SLEI family protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
       0.508
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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