Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69136.1PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: pca:Pcar_2400 NCAIR mutase (PurE)-related proteins. (250 aa)    
Predicted Functional Partners:
ADD69036.1
PFAM: Queuosine synthesis-like; KEGG: cco:CCC13826_1003 hypothetical protein.
 
  
 0.954
ADD69465.1
PFAM: protein of unknown function DUF111; KEGG: gsu:GSU0141 hypothetical protein; Belongs to the LarC family.
  
 0.936
ADD69202.1
PFAM: Protein of unknown function DUF2088; KEGG: geo:Geob_0833 hypothetical protein.
 
  
 0.921
rlmE
Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
       0.817
ADD69137.1
PFAM: nitroreductase; KEGG: dal:Dalk_3773 nitroreductase.
       0.773
ADD67105.1
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sfu:Sfum_2752 cobalamin (vitamin B12) biosynthesis CbiM protein.
 
    0.718
ADD69134.1
TIGRFAM: ribonuclease, Rne/Rng family; KEGG: glo:Glov_0469 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G.
       0.681
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.636
ADD69132.1
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.614
ADD68093.1
PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein.
 
     0.576
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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