Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69145.1PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein. (466 aa)    
Predicted Functional Partners:
ADD67440.1
Hypothetical protein; KEGG: abu:Abu_1714 ATPase, putative.
 
    0.580
ADD67372.1
KEGG: gem:GM21_0793 ATP-dependent Lon-type protease- like protein.
  
  
 0.563
ADD67848.1
Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: abu:Abu_1172 putative DNA helicase.
  
    0.552
ADD67680.1
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: pca:Pcar_1454 RNA-binding protein.
  
    0.526
ADD69146.1
KEGG: glo:Glov_1665 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.511
ADD69147.1
PFAM: outer membrane efflux protein; KEGG: dat:HRM2_47430 putative outer membrane protein.
       0.511
ADD69140.1
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: glo:Glov_1143 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase.
       0.492
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.492
ADD69142.1
TIGRFAM: outer membrane assembly lipoprotein YfiO; PFAM: TPR repeat-containing protein; KEGG: glo:Glov_2951 outer membrane assembly lipoprotein YfiO; SMART: Tetratricopeptide repeat.
       0.492
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.492
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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