Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69168.1KEGG: pca:Pcar_2042 membrane-bound lytic murein transglycosylase D precursor; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM. (583 aa)    
Predicted Functional Partners:
ADD68425.1
PFAM: NLP/P60 protein; Sporulation domain protein; KEGG: pca:Pcar_1371 cell wall-associated hydrolase/invasion-associated protein.
  
  
 0.707
ADD69587.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
 
   
 0.706
ADD69166.1
KEGG: mxa:MXAN_0213 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type.
 
     0.694
ADD69164.1
KEGG: dal:Dalk_0840 hypothetical protein.
       0.643
nth
DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.605
ADD67686.1
PFAM: OmpA/MotB domain protein; OmpA domain protein transmembrane region-containing protein; Thrombospondin type 3 repeat; OmpF family protein; KEGG: gsu:GSU0360 OmpA domain-containing protein.
 
 
 
 0.599
ADD66925.1
KEGG: dps:DP0512 outer membrane (agglutination) protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: OmpA/MotB domain protein; outer membrane efflux protein.
 
 
 
 0.582
ADD69167.1
PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_1811 glycosyl transferase, family 2.
       0.581
ADD69163.1
PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: mmb:Mmol_0601 major facilitator superfamily MFS_1.
       0.579
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.576
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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