STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD69182.1PFAM: FAD dependent oxidoreductase; KEGG: sat:SYN_02917 FAD-dependent dehydrogenase. (449 aa)    
Predicted Functional Partners:
ADD69181.1
KEGG: sfu:Sfum_2125 phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase.
       0.818
ADD69179.1
5-carboxymethyl-2-hydroxymuconateDelta- isomerase; KEGG: acp:A2cp1_4215 5-oxopent-3-ene-1,2,5- tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase.
 
     0.604
ADD69180.1
PFAM: Polynucleotide adenylyltransferase region; KEGG: gme:Gmet_2285 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.584
ADD69178.1
PFAM: protein of unknown function UPF0153; KEGG: gme:Gmet_2777 hypothetical protein.
       0.505
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.501
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.491
ADD69173.1
PFAM: protein of unknown function UPF0102; KEGG: dal:Dalk_4642 protein of unknown function UPF0102; Belongs to the UPF0102 family.
       0.482
ADD69175.1
KEGG: gsu:GSU0305 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K.
       0.482
hypA
Hydrogenase expression/synthesis HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.482
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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