STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD69307.1KEGG: dps:DP0160 periplasmic [NiFeSe] hydrogenase, small subunit [precursor]; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit. (310 aa)    
Predicted Functional Partners:
ADD69308.1
KEGG: dps:DP0159 cytochrome-c3 hydrogenase (NiFeSe), large subunit; PFAM: nickel-dependent hydrogenase large subunit.
 
 0.999
ADD67992.1
KEGG: gur:Gura_1946 nickel-dependent hydrogenase, large subunit; PFAM: nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.996
ADD69246.1
PFAM: nickel-dependent hydrogenase large subunit; KEGG: gsu:GSU0122 nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.996
ADD67984.1
KEGG: gur:Gura_0874 Ni/Fe-hydrogenase, b-type cytochrome subunit; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561.
 
 
 0.976
ADD69245.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: gme:Gmet_3332 Ni-Fe hydrogenase, small subunit:twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
  
  
 
0.921
ADD67995.1
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: glo:Glov_0144 hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
  
  
 
0.920
ADD69247.1
KEGG: gme:Gmet_3329 peptidase M52, hydrogenase maturation peptidase; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.
 
  
 0.833
ADD67991.1
KEGG: gur:Gura_1947 hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.
 
  
 0.832
ADD68457.1
KEGG: pca:Pcar_0377 NifJ-like oxidoreductase, Fe-S subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Pyruvate-flavodoxin oxidoreductase, EKR domain.
   
  
 0.778
ADD68628.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sun:SUN_1757 rubredoxin.
  
 
 0.639
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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