Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69356.1Agmatinase; KEGG: dvl:Dvul_2513 putative agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. (286 aa)    
Predicted Functional Partners:
ADD69355.1
Carboxynorspermidine decarboxylase; KEGG: sde:Sde_1596 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2.
 
 
 0.983
ADD69353.1
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
 
 0.971
ADD69354.1
PFAM: Saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase.
 
   
 0.862
leuS
KEGG: dal:Dalk_1193 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.760
ADD69063.1
PFAM: protein of unknown function DUF1385; KEGG: geo:Geob_0684 protein of unknown function DUF1385.
   
    0.735
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: dat:HRM2_27570 ArgD; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.679
ADD68566.1
KEGG: glo:Glov_1379 type I citrate synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.651
ADD69357.1
KEGG: dat:HRM2_12550 hypothetical protein.
     
 0.585
ADD68791.1
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.578
clpP
ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
    
  0.551
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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