Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69357.1KEGG: dat:HRM2_12550 hypothetical protein. (111 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.775
ADD69045.1
PFAM: cyclic nucleotide-binding; ribonuclease BN; KEGG: tbd:Tbd_1570 cyclic nucleotide-binding domain- containing protein.
  
 
 0.596
ADD69356.1
Agmatinase; KEGG: dvl:Dvul_2513 putative agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
     
 0.585
ADD69355.1
Carboxynorspermidine decarboxylase; KEGG: sde:Sde_1596 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2.
     
 0.583
ADD69354.1
PFAM: Saccharopine dehydrogenase; KEGG: dvl:Dvul_2516 saccharopine dehydrogenase.
       0.578
msrB
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.564
ADD69353.1
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
       0.559
ADD69358.1
PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein.
       0.520
ADD69359.1
PFAM: protein of unknown function UPF0029; KEGG: abu:Abu_1834 hypothetical protein.
       0.520
ADD68697.1
PFAM: purine or other phosphorylase family 1; KEGG: pca:Pcar_3117 methylthioadenosine nucleosidase.
  
  
 0.435
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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