Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
ADD69420.1KEGG: vfi:VF_1461 hypothetical protein. (675 aa)    
Predicted Functional Partners:
ADD69422.1
KEGG: vfi:VF_1463 hypothetical protein.
   
 
 0.939
ADD68573.1
PFAM: protein of unknown function DUF214; KEGG: gsu:GSU1774 cell division ABC transporter, permease protein FtsX, putative.
   
 
 0.815
ADD68572.1
ABC transporter related protein; KEGG: glo:Glov_1923 cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.782
ADD69421.1
KEGG: vfi:VF_1462 hypothetical protein.
       0.778
ADD69587.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
   
 
 0.743
ADD68373.1
SMART: Tetratricopeptide repeat; KEGG: dde:Dde_2157 TPR repeat-containing protein.
   
   0.740
ADD69419.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.550
ADD69423.1
KEGG: vcj:VCD_003045 hypothetical protein.
       0.500
ADD69424.1
PFAM: N-6 DNA methylase; KEGG: fph:Fphi_0190 type I restriction-modification system methyltransferase subunit like protein.
       0.500
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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