Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD69422.1KEGG: vfi:VF_1463 hypothetical protein. (377 aa)    
Predicted Functional Partners:
ADD69420.1
KEGG: vfi:VF_1461 hypothetical protein.
   
 
 0.939
ADD69421.1
KEGG: vfi:VF_1462 hypothetical protein.
       0.799
ADD68574.1
PFAM: Peptidase M23; KEGG: glo:Glov_1921 peptidase M23.
   
 
 0.743
ADD69419.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.550
ADD69423.1
KEGG: vcj:VCD_003045 hypothetical protein.
       0.500
ADD69424.1
PFAM: N-6 DNA methylase; KEGG: fph:Fphi_0190 type I restriction-modification system methyltransferase subunit like protein.
       0.500
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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