Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69451.1KEGG: geo:Geob_1116 twitching motility protein. (126 aa)    
Predicted Functional Partners:
ADD69050.1
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.809
ADD67136.1
PFAM: Type II secretion system F domain; KEGG: ilo:IL0371 type II secretory pathway.
 
  
 0.799
ADD67290.1
PFAM: Type II secretion system F domain; KEGG: sdn:Sden_0123 general secretion pathway protein F.
 
  
 0.795
ADD67137.1
KEGG: nis:NIS_1563 general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
 0.794
ADD67084.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: acp:A2cp1_0675 type IV pilus assembly protein PilM.
 
   
 0.788
ADD67289.1
Type II secretion system protein E; KEGG: cti:RALTA_A2997 general secretory pathway E protein, ATPase component; PFAM: type II secretion system protein E; SMART: AAA ATPase.
  
 0.785
ADD69452.1
PFAM: transposase IS3/IS911 family protein; KEGG: dda:Dd703_2340 transposase IS3/IS911 family protein.
       0.639
ADD69453.1
PFAM: Integrase catalytic region; KEGG: pca:Pcar_1347 IS3 putative transposase.
       0.622
ADD69454.1
Hypothetical protein.
       0.449
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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