Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD69576.1KEGG: afr:AFE_0685 death-on-curing family protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic. (326 aa)    
Predicted Functional Partners:
ADD68234.1
PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_2607 restriction modification system DNA specificity subunit.
  
    0.523
ADD68235.1
Protein of unknown function DUF450; KEGG: psa:PST_0248 type I restriction-modification system endonuclease; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
  
    0.523
ADD68743.1
PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_2607 restriction modification system DNA specificity subunit.
  
    0.523
ADD68744.1
Protein of unknown function DUF450; KEGG: psa:PST_0248 type I restriction-modification system endonuclease; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase.
  
    0.523
ADD69316.1
PFAM: restriction modification system DNA specificity domain; KEGG: rfr:Rfer_0030 restriction modification system DNA specificity subunit.
  
    0.523
ADD69319.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.523
ADD69419.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.523
ADD69423.1
KEGG: vcj:VCD_003045 hypothetical protein.
  
    0.523
ADD68232.1
PFAM: N-6 DNA methylase; KEGG: psa:PST_0252 type I restriction-modification system, M subunit.
  
    0.520
ADD68741.1
PFAM: N-6 DNA methylase; KEGG: psa:PST_0252 type I restriction-modification system, M subunit.
  
    0.520
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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