Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD69717.1PFAM: protein of unknown function DUF610 YibQ; KEGG: pca:Pcar_1672 hypothetical protein. (431 aa)    
Predicted Functional Partners:
ADD69718.1
KEGG: tau:Tola_1997 hypothetical protein.
       0.773
ADD69719.1
KEGG: bba:Bd0348 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
       0.543
ADD69720.1
KEGG: bba:Bd0347 hypothetical protein.
       0.543
ADD69587.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
 
     0.471
ADD68574.1
PFAM: Peptidase M23; KEGG: glo:Glov_1921 peptidase M23.
 
     0.408
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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