STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_0061PFAM: protein of unknown function DUF1508; KEGG: swp:swp_4485 hypothetical protein. (111 aa)    
Predicted Functional Partners:
Kkor_2018
PFAM: Peptidoglycan-binding LysM; Tetratricopeptide TPR_2 repeat protein; SMART: Peptidoglycan-binding LysM; KEGG: azo:azo0897 hypothetical protein.
  
   0.802
Kkor_2617
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: cja:CJA_3583 LysM domain protein.
  
   0.802
Kkor_0060
KEGG: slo:Shew_2272 hypothetical protein.
       0.625
Kkor_0059
Hypothetical protein.
       0.547
Kkor_0062
PFAM: 5 nucleotidase deoxy cytosolic type C; KEGG: sbl:Sbal_1137 hypothetical protein.
       0.472
Kkor_1416
PFAM: Transglycosylase-associated protein; KEGG: ses:SARI_01707 hypothetical protein.
   
  
 0.428
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.