STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_0419PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2390 Xaa-Pro dipeptidase family enzyme. (430 aa)    
Predicted Functional Partners:
Kkor_2081
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mmr:Mmar10_2365 amidohydrolase.
  
     0.772
Kkor_2183
PFAM: amidohydrolase; KEGG: sus:Acid_7338 amidohydrolase.
 
     0.742
Kkor_2141
KEGG: pha:PSHAa2859 hypothetical protein.
  
     0.702
Kkor_2140
KEGG: pat:Patl_1102 hypothetical protein.
  
     0.661
Kkor_2267
KEGG: amc:MADE_02647 Xaa-Pro aminopeptidase family enzyme.
  
     0.588
Kkor_1168
PFAM: Phosphoglycerate mutase; KEGG: sfr:Sfri_2302 putative phosphohistidine phosphatase, SixA.
  
     0.566
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.553
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
       0.501
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.498
Kkor_1666
KEGG: shl:Shal_4007 hypothetical protein.
  
     0.484
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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