STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kkor_0500PFAM: protein of unknown function DUF446; KEGG: aha:AHA_1163 hypothetical protein. (112 aa)    
Predicted Functional Partners:
Kkor_0499
KEGG: rce:RC1_2673 hypothetical protein.
       0.773
Kkor_0501
PFAM: zinc finger DksA/TraR C4-type; KEGG: aeh:Mlg_0421 TraR/DksA family transcriptional regulator.
       0.732
Kkor_0214
KEGG: shl:Shal_1168 hypothetical protein.
  
     0.631
Kkor_1457
KEGG: pmu:PM1834 hypothetical protein.
  
     0.620
Kkor_0744
PFAM: protein of unknown function DUF339; KEGG: csa:Csal_2151 protein of unknown function DUF339.
  
     0.549
Kkor_0798
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: aha:AHA_1345 PsrA protein.
  
     0.462
Kkor_0498
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3109 TonB-dependent receptor.
       0.426
Kkor_2151
PFAM: protein of unknown function DUF47; KEGG: aha:AHA_3771 hypothetical protein.
  
     0.423
slmA
Transcriptional regulator, TetR family; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions.
  
     0.416
Kkor_0137
PFAM: Rhomboid family protein; KEGG: ilo:IL0267 membrane serine peptidase.
  
     0.404
Your Current Organism:
Kangiella koreensis
NCBI taxonomy Id: 523791
Other names: K. koreensis DSM 16069, Kangiella koreensis DSM 16069, Kangiella koreensis JCM 12318, Kangiella koreensis KCTC 12183, Kangiella koreensis SW-125, Kangiella koreensis str. DSM 16069, Kangiella koreensis strain DSM 16069
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.